Scientific Apps

• GROMACS - OpenSource MD software
• CHARMM - Chemistry at HARvard Molecular Mechanics
• DELPHI - A Finite Difference Poisson-Boltzman Solver
• MEAD - Macroscopic Electrostatics with Atomic Detail. A free electrostatics package
• MSP - A molecular surface calculation package
• MSMS (part of Packager) - Excellent surface generation program written by Michel Sanner
• RCSB Homepage, the Protein Databank
• UHBD - University of Houston Brownian Dynamics Program
• CNS - Crystallography and NMR system
• SPIDER - EM Image Processing Package
• Xmipp - EM Image Processing Package

Miscellaneous

• POV-ray a powerful raytracer package
• Animation Tutorial - A tutorial by Juergen Helmers that demonstrates how to create a movie from a SPIDER volume in DINO. Can be easily applied to other datasets as well, since the last few steps are generic.
• ProteinPictureGenerator - A nice site to automatically generate a picture of a coordinate file. Uses DINO as backend. Upon generation of a picture, the script file employed may be downloaded as well, which might serve as an excellent start to get going with DINO.
• MESA 3D - a free OpenGL like API
• LessTif - a free Motif clone